Bioconjugate Cleanup

Bioconjugates are macromolecular complexes composed of a biomolecule (e.g. protein, nucleic acid) bonded covalently to a functional moiety (e.g. drug, chromophore) which enhances their physico-chemical properties and functionality. They have broad applications in areas like targeted drug delivery, diagnostics, and therapeutics.

 

The types of bioconjugates vary widely depending on the specific biomolecules involved and the desired properties of the final product. Common examples of bioconjugates include antibody-drug conjugates or ADCs (formed by linking a therapeutic drug to an antibody for targeted delivery), fluorescently labeled proteins (for imaging and studying protein localization and dynamics), and nanoparticle-biomolecule conjugates (for drug delivery, imaging, and biosensing).

 

A typical biosynthetic workflow of bioconjugates such as ADCs includes synthesis, purification (bioconjugate cleanup) and formulation. Bioconjugate cleanup is integral to the production workflow which involves the removal of unbound molecules and other impurities from the reaction mixture. This is crucial, as the presence of unconjugated material in the final sample can interfere with the desired function, leading to non-specific results or even toxicity, if intended for therapeutics. Likewise, final formulation of the bioconjugates at appropriate concentration and in a specific buffer is necessary to ensure their structural integrity and effectiveness for downstream applications. Besides cleanup efficacy and gentleness, another crucial factor to be considered is the processing time. Faster purification methods are often preferred, especially while processing large volumes for time-sensitive applications. Additionally, the chosen method should not be limited by specific volume and should be easily adapted to scale up for larger volumes.

ADC's Synthesis and Purification

The table below shows the comparison of common techniques used for bioconjugate cleanup. It is evident that ultrafiltration addresses all the considerations of bioconjugate cleanup compared to the conventional methods. However, ultrafiltration using dead-end devices is limited by low filtration rates as well as lack of scalability, and is often accompanied by sample loss. Moreover, it is fairly a hands-on method. In contrast, ultrafiltration in the form of tangential flow filtration (TFF) offers higher filtration rates and scalability. Additionally, the TFF has the advantage of simultaneous purification and formulation of bioconjugates. However, conventional TFF systems are large, with high hold-up volumes, making them unsuitable for lab scale applications.

Considerations Precipitation Equilibrium Dialysis Chromatography Ultrafiltration

Dead-End                  TFF
Cleanup efficacy                              
Gentleness                                 
Time efficiency                                 
Scalability                                 

Table: Comparison of techniques used for bioconjugate cleanup

Bioconjugate Cleanup using the µPulse TFF System

The µPulse is an automated and miniaturized TFF system, explicitly designed for lab scale applications. It is well suited for the purification of a variety of bioconjugates including ADCs, oligonucleotide antibody complexes, fluorescent labels, peptide carrier, and biotinylated conjugates.

 

The entire fluid path is miniaturized on the filter chip by combining microfluidic pumping technology with TFF. This has reduced the hold-up volume to just 0.65 mL, ensuring maximum hold-up recovery. The filter chips are available with modified polyethersulfone (mPES) and regenerated cellulose (RC) membranes that exhibit low fouling characteristics and are compatible with a variety of sample types.

 

The µPulse offers customizable parameters such as operating pressures to make the process gentle, ensuring homogenous conjugation ratio. Furthermore, it processes samples 4x faster compared to the dead-end centrifugal units, and in a walk-away approach.

Pulse - TFF system

Webinars

Experience the single-step and scalable purification of ADCs and other macromolecules modified with small molecules using the µPulse.

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Anti body drug conjugate

Explore a novel, automated and walk away approach for sample concentration and buffer exchange at lab scale using the µPulse- a miniaturized TFF system

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