Small-Molecule Crystallization

Small molecules play essential roles across chemistry, life sciences, and medicine. Their properties, including solubility, stability, mechanical behavior, luminescence, and biological activity, are all closely linked to molecular structure and crystal packing. Different crystal forms (polymorphs) of the same compound can exhibit significantly different performance, affecting factors such as drug efficacy, stability, and manufacturability. As a result, accurate structural characterization is critical for understanding and optimizing small-molecule behavior. However, obtaining diffraction-quality single crystals remains one of the major challenges in small-molecule crystallization workflows.

Small-Molecule Crystallization Workflow

Small-molecule crystallization is a multistep process that begins with experimental design. This is followed by screen building, where a matrix of chemical conditions is prepared to identify the environment that best promotes crystal formation. Plates are then set up using established crystallization formats, including sitting drop, microbatch, and encapsulated nanodroplet methods. Samples are incubated under controlled conditions and imaged at regular intervals to track changes in the drops over time, enabling the identification of promising crystal hits, distinguishing crystalline material from precipitate or phase separation, and selecting conditions for further optimization. Promising conditions are carried forward for optimization, refining the original screen to improve crystal size and diffraction quality for structural analysis.

Small-Molecule Crystallization Workflow_Compressed

Figure 1: Small-Molecule Crystallization Workflow

Need for Automation

The manual workflow is time-inefficient, labor- and resource-intensive, with limited throughput and reproducibility. Automating the crystallization workflow ensures time efficiency and reproducibility while providing high throughput through miniaturization.

Formulatrix Small-Molecule Crystallization Automation Suite_Compressed

Figure 2: Formulatrix Small-Molecule Crystallization Automation Suite

 

Robotic liquid handling systems enable parallel screening of a large number of conditions using sub-microliter volumes, thereby increasing efficiency while conserving valuable material. Integration with automated imaging and data management platforms further supports continuous monitoring, organization, and optimization of crystallization experiments.

Automation Solutions by Formulatrix

The crystallization portfolio from Formulatrix offers an integrated approach for automated small-molecule crystallization:

Formulator® - Screen Builder

The Formulator® enables the preparation of customized crystallization screens through microfluidic liquid dispensing, precisely combining reagents to build complex screens tailored to a specific small molecule.

NT8® - Drop Setter

NT8® allows accurate, low-volume dispensing for a diverse range of crystallization trial setups, including sitting drop, hanging drop, microbatch, and encapsulated nanodroplet formats.

 

Rock Imager® - Crystallization Imager

The Rock Imagers®, automated high-resolution imaging platforms, capture images throughout crystal growth with the imaging modality of your choice. These systems enable consistent monitoring by eliminating manual plate handling and reducing operator eye strain.

Rock Maker® - Crystallization Software

Rock Maker® software manages experimental design, tracking, and analysis, enabling systematic screening and optimization of crystallization conditions from a single dashboard.

Together, these systems support a streamlined workflow from sample preparation to crystal identification. By combining automation, miniaturization, and data management, such approaches reduce the experimental burden associated with crystallization while improving the likelihood of obtaining diffraction-quality crystals for structural analysis.

"We are very happy with the extremely reliable Rock Imager® 1000 and the corresponding software Rock Maker®. Both products together allow us to efficiently monitor the progress of our thousands of small-molecule crystallization trials in 96-well plates with a standard SBS/ANSI footprint."

Prof. Dr. Bernhard Spingler
Titularprofessor

Webinars

Crystallization of Small-Molecules with Robotic Methods

Learn how automation is transforming small-molecule crystallization workflows and enabling more efficient structure determination.

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