Automated Liquid Handling for
Assay Development and Optimization

Assay development and optimization are critical processes in scientific research and industrial applications. Their significance spans across multiple fields, including diagnostics, drug discovery, genomics, proteomics, and quality control. Well-optimized assays improve the workflow productivity by ensuring specificity, reaction miniaturization,  and faster results.

 

The One-Factor-At-a-Time (OFAT) approach for assay development and optimization, while straightforward, requires a higher number of experiments, consuming more reagents and time. It also fails to identify significant interactions between factors, leading to suboptimal results.

 

In contrast, Design of Experiments (DoE) enables systematic identification and optimization of assay parameters. It not only saves time and resources but also provides deeper insights into interactions between variables with fewer experiments. However, DoE's complexity arises from the need to prepare multiple reagent combinations simultaneously.

 

Liquid handling is central to executing either OFAT or DoE, and presents several challenges such as precision, time and cost efficiency, throughput, and reproducibility. Manual pipetting, while cost-effective for simple workflows, is limited by low precision, throughput, and reproducibility, especially with small volumes. Moreover, it is not suited for implementing complex DoE protocols.

assay development

Stages in assay development and optimization

In contrast, automated liquid handling (ALH) offers high-throughput assay development and optimization, and reduces processing time and ensures reproducibility by eliminating operator variability. ALH systems also facilitate efficient translation of complex DoE protocols by providing precise control over experimental variables. These capabilities make ALH an indispensable tool for cost-effective and reproducible assay development and optimization.

Formulatrix ALH for Assay Development and Optimization

Formulatrix’s ALH systems — including the Mantis® and Tempest® tipless dispensers, and the F.A.S.T.TM and FLO i8® PD liquid handlers — provide precise and accurate small-volume dispenses that help ensure consistent results across experiments. Our ALH systems feature user-friendly programming interfaces that allow researchers to easily define and execute complex DoE protocols. With API integration, our systems enable connectivity with other laboratory instruments and software, thus supporting comprehensive workflow automation and data synchronization.

Formulatrix Liquid Dispensers

Formulatrix Liquid Handlers

Liquid Handling Features Mantis Tempest F.A.S.T. FLO i8 PD
TechnologyMicrodiaphragm pumpMicrodiaphragm pumpPositive displacementPositive displacement
Precision (CV)< 2% at 100 nL< 3% at 200 nL< 5% at 100 nL< 5% at 0.5 µL
Liquid Class CompatibilityUp to 25 cPUp to 20 cPLiquid class agnosticLiquid class agnostic
ThroughputLow to mediumMedium to highMedium to highLow to medium
Contamination Risk MitigationNon-contact dispensing
with isolated fluid path
Non-contact dispensing
with isolated fluid path
Disposable tipsDisposable tips
Hold-Up Volume (µL)~6~48 (per chip)Close to zeroClose to zero
Volume Range100 nL-∞200 nL-∞100 nL- 13µL200* nL- 1 mL

*200 nL for non-contact dispensing and 500 nL for contact transfer

Table: Formulatrix ALH systems

Webinars

Discover how the F.A.S.T. liquid handler facilitates the quantification of over 5,000 proteins from as little as three microliters of sample.

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Explore how our non-contact liquid dispensers effectively streamline DoE campaigns through significant time and resource savings.

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Application Notes

Mantis facilitates high-combinatorial screening for media optimization with enhanced precision through its innovative tipless dispensing technology.

Read the Application Note

Experience how the Tempest drives down the cost of assay reagents by 60% with miniaturization while generating high-quality screening data.

Read the Application Note

Publications
Citations: 179
Ali et al., 2026 |Redox Biology |Link
SummaryBACH is a transcriptional regulator that modulates various cytoprotective pathways Among these pathways BACH regulates the cellular oxidative stress responses by suppressing the expression of cytoprotective genes Dysregulated BACH activity has been implicated in a range of pathologies including chronic inflammatory diseases fibrosis and cancer making it a promising therapeutic ...More |Related Solutions: Tempest®
Zamani et al., 2026 |ACS Omega |Link
The PD- PD-L immune checkpoint is a pivotal target for cancer immunotherapy Monoclonal antibodies mAbs targeting the PD- PD-L interaction have achieved clinical success but face limitations including high production costs suboptimal tumor penetration and potential immunogenicity To address these challenges we present the DNA-linked Inhibitor Antibody Assay DIANA a ...More |Related Solutions: Mantis®
Bathe et al., 2026 |ACS Applied Materials and Interfaces |Link
Nucleic acid nanoparticles NANPs fabricated by using DNA origami are an emerging delivery vector for nucleic acid therapeutics Despite their advantages over other nanomaterials that include controlled spatial presentation of targeting ligands such as lipids and sugars understanding their cell targeting and uptake mechanisms remains limited Here we investigated NANP ...More |Related Solutions: FLO i8® PD
Leeuwen et al., 2026 |NAR Molecular Medicine |Link
Antisense oligonucleotides ASOs are promising therapeutics but safety concerns such as liver toxicity and off-target OffT effects necessitate thorough evaluation during the compound selection process This study leverages time course global proteomics and transcriptomics to assess ASO-induced changes in vitro comparing liver toxic versus non-liver toxic ASOs The research confirms ...More |Related Solutions: Mantis®
Duong et al., 2026 |Preprint |Link
The chikungunya virus CHIKV outbreak imposes a significant burden on healthcare systems and raises an urgent need for effective antiviral therapies So far there are no specific drugs against CHIKV A CHIKV macrodomain is critical for virulence and counteracts the host immune response representing a promising antiviral drug target Here ...More |Related Solutions: Mantis®